| 1 | Africa Graduate University | — | 2012 | — |
| 2 | African Bible College | Kampala | 2005 | — |
| 3 | African Bible University | — | 2005 | — |
| 4 | African Rural University | Kagadi | 2009 | — |
| 5 | Aga Khan University | Kampala | 2001 | — |
| 6 | All Saints University | Lira | 2008 | — |
| 7 | All Saints University Lango | Lira | 2009 | — |
| 8 | Ankole Western University | Rutoma | 2005 | — |
| 9 | Avance International University | Kampala | 2016 | — |
| 10 | Bishop Stuart University | — | 2003 | — |
| 11 | Bugema University | Kasangati | 1948 | — |
| 12 | Busitema University | Busia | 2007 | — |
| 13 | Universidad de Busoga | Iganga | 1999 | — |
| 14 | Busoga University | Kamuli | — | — |
| 15 | Cavendish University Uganda | Kampala | 2008 | — |
| 16 | Universidad Central de Buganda | — | 2000 | — |
| 17 | Clarke International University | — | 2008 | — |
| 18 | Equator University of Science and Technology | — | — | — |
| 19 | Ernest Cook University | — | 2002 | — |
| 20 | Fairland University | Njeru | 2001 | — |
| 21 | Ggaba National Major Seminary | Kampala | — | — |
| 22 | Universidad de Gulu | Gulu | 2001 | — |
| 23 | International Health Sciences University | Kampala | 2008 | — |
| 24 | International University of East Africa | Kampala | 2010 | — |
| 25 | Inter-University Council for East Africa | — | 1980 | — |
| 26 | ISBAT University | Kampala | 2005 | — |
| 27 | Kabale University | Kabale | 2001 | — |
| 28 | Kampala International University | Kampala | 2001 | — |
| 29 | Kampala International University School of Health Sciences | Ishaka | 2004 | — |
| 30 | Universidad de Kampala | Kampala | 1999 | — |
| 31 | Karamoja Peace and Technology University | — | — | — |
| 32 | Katigondo National Major Seminary | Masaka | — | — |
| 33 | Kayiwa International University | Kampala | 2012 | — |
| 34 | Kigumba Petroleum Institute | Buyale | 2009 | — |
| 35 | King Ceasor University | — | 2011 | — |
| 36 | Kumi University | Kumi | 2004 | — |
| 37 | Universidad Kyambogo | Kampala | 2003 | — |
| 38 | Kyambogo University Bushenyi Learning Centre | Ishaka | — | — |
| 39 | Limkokwing University of Creative Technology | — | 2019 | — |
| 40 | Lira University | Lira | 2012 | — |
| 41 | LivingStone International University | Mbale | 2012 | — |
| 42 | Lugazi University | Lugazi | 2007 | — |
| 43 | Makerere University School of Dentistry | Kampala | — | — |
| 44 | Makerere University School of Law | — | — | — |
| 45 | Makerere University School of Women and Gender Studies | — | — | — |
| 46 | Universidad de ciencias y tecnologías de Mbarara | Mbarara | 1989 | — |
| 47 | Mountains of the Moon University | Fort Portal | 2005 | — |
| 48 | Muni University | Arua | 2012 | — |
| 49 | Muteesa I Royal University | Masaka | 2007 | — |
| 50 | Ndejje University | Wobulenzi | 1992 | — |
| 51 | Nile University of Uganda | Arua | 2003 | — |
| 52 | Nkumba University | Katabi | 1994 | — |
| 53 | Reformed Theological College (Uganda) | — | 1994 | — |
| 54 | Saint Lawrence University | — | — | — |
| 55 | Saint Mbaaga's Major Seminary Ggaba | Kampala | — | — |
| 56 | Soroti University | Soroti | 2015 | — |
| 57 | St. Augustine International University | Kampala | 2011 | — |
| 58 | St. Lawrence University | Kampala | 2006 | — |
| 59 | Team University | Kampala | 2010 | — |
| 60 | Uganda Christian University | Kira | 1997 | — |
| 61 | Uganda Management Institute | Kampala | 1968 | — |
| 62 | Uganda Martyr's National Major Seminary Alokolum | Gulu | — | — |
| 63 | Uganda Martyrs University | — | 1993 | — |
| 64 | Uganda Martyrs University School of Medicine | Kampala | 2010 | — |
| 65 | Uganda Pentecostal University | Fort Portal | 2005 | — |
| 66 | Uganda Technology and Management University | Kampala | 2012 | — |
| 67 | University of the Sacred Heart Gulu | — | 2016 | — |
| 68 | Valley University of Science and Technology | Ishaka | 2016 | — |
| 69 | Victoria University | Kampala | 2011 | — |
